
Dr Wei's Warzone Bacterium Research
with Acinetobacter Baumanni
Wendy Rigby - KENS 5
The San Antonio Area Foundation is funding some important scientific studies at the University of Texas at San Antonio. The money is helping to pay for work on a new treatment for a “military” health threat.
Acinetobacter baumannii is a tiny organism with a long name. It’s a soil-dwelling bacterium that threatens the health of soldiers in Iraq and Afghanistan, and can also infect their family members once they return home. A common breeding ground is skin and soft tissue, where it grows in new wounds.
Now, scientists at UTSA are attempting to clear up some of the mystery surrounding this pathogen, which is difficult to treat and resistant to many antibiotics.
“It’s everywhere,” explained UTSA microbiologist Tao Wei, Ph.D., M.D. “It’s in the soil, in the water, in the sewage and in hospital settings.”
Microbiologists led by Wei are searching for a novel way to combat A. baumannii infections. In just the last year, they’ve been able to isolate several important proteins. These proteins enable the bacteria to form a biofilm, a way for the organism to stick to wounds and infect human tissue.
By purifying the proteins and developing antibodies, these scientists hope to come up with an injectable therapy that could stop infection before it starts. That drug could be part of every footsoldier’s gear and every field hospital’s arsenal of drugs.
“The final product would be very protective against infections and the product could be carried by the military personnel to the battlefield,” Wei said.
Drug-resistant microbes are stubborn enemies, and these San Antonio scientists are on the front line of the battle to keep them from causing misery and claiming lives.
Wei is hopeful that his work will attract future funding from the Department of Defense, since the issue is so crucial to the men and women fighting in Iraq and Afghanistan.
Link to KENS 5 story
Link to related UTSA article

Dr. Renthal's ant Lab Research
By Don Finley - Express-News
Walking in the footsteps of Doctor Dolittle, Robert Renthal hopes one day to talk to the insects. Fire ants in particular. He would like very much to tell them to get out of your yard.
Of course, ants don't really talk in any conventional sense. They communicate using pheromones — chemical messages they send and receive through their antennae. And those chemical messages are what Renthal, a professor of biochemistry at the University of Texas at San Antonio, is trying to decipher.
“They must have what for all we know amounts to a language,” Renthal said. “They have a division of labor. In some species of ant, the complexity of what they do is just astonishing.”
Take the weaver ant, for example — a species found in parts of Africa, Asia and Australia. The ants work together to build their nests from tree leaves. But how they weave them takes some elaborate choreography, Renthal said.
“They form a chain of ants. One ant grabs a leaf over here and another ant grabs one there, and between them there's a whole chain of ants holding onto each other, and then they shorten the chain to bring the leaves together. Then other ants go around and glue the leaves together with little aerosol cans of glue. Those aerosol cans of glue are larvae that they're holding in their mandibles. They squeeze on the larvae and out shoots a jet of silk.”
Most creatures communicate in some fashion using pheromones. But the number of chemical messages recognized by ants seems to be a lot greater — probably in the hundreds.
There are pheromones used to signal to others the presence of food or danger. Pheromones that allow one ant to recognize another from the same nest or mound. Pheromones that signal the ant equivalent of romantic desire.
There's even a pheromone that ants produce shortly after they drop dead. Another ant, sensing this, will carry it to the dead ant pile. Scientists have dabbed a little of this grim reaper pheromone on perfectly healthy, still-breathing ants. They get carried to the dead ant pile too.
The question is how to isolate more of those chemicals and figure out what they mean. Lots of scientists have been working on this for many years, and a few pheromones have been identified. But it's a slow and laborious process.
Renthal — who began his research studying the anatomy of ant antennae — is working backward. Rather than trying to pick out one meaningful chemical from hundreds, he's starting on the receiving end. He's identified odor-binding proteins and chemosensory proteins that grab specific chemical compounds and carry them to nerve cell receptors in the antenna. He can analyze the substances that attach to those binding proteins, and then squirt them on ants in his lab to see what effect they have.
It's a novel and still-unproven method, one that may or may not pay off. But he's been steadily awarded competitive grants to pursue it, most recently UTSA's first grant under the federal stimulus program — $390,000 to study various parts of an insect's pheromone receptor structure.
And if he could somehow figure out what they're saying, what might Renthal tell them?
“It would be nice to be able to say to the fire ants: ‘You can be here, but not over here.' A lot of farmers actually like them because they attack and kill cotton boll worms. So you might attract them to places where they could be of some value, and keep them away from the fields where they are damaging crops or people's houses.”
Link to story

Dr Troyer's research with song birds
By Cindy Tumiel - Express-News
Todd Troyer likes to joke about how he’s made a career of studying birdbrains.
But it’s a serious undertaking for the University of Texas at San Antonio researcher, who is using the short, boisterous mating song of the zebra finch as a bridge to understanding how the brain coordinates the complex tasks of learning, remembering and vocalizing.
“I am trying to write the story about how all those things fit together,” Troyer said. Songbirds are one of the few species that learn vocal behavior from adult tutors. Just like human babies, the baby birds need to hear and mimic adults in order to learn their language of song.
Of zebra finches, only the males sing; it’s an essential vocal behavior that identifies them to potential mates. If raised without adult males nearby, the youngster never learns a melody; it develops only an instinctive, innate squawking that is not quite a song. Without a male role model, he will never learn the song that is essential for attracting females for breeding.
The tiny orange-beaked finches are commonly found in the laboratories of neurobiologists, who use the birds in experiments aimed at unraveling the hidden brain circuits involved in learning and memory. Troyer is approaching the problem from a different angle.
Sequestered in a quiet room of his laboratory, a baby finch and adult male live in adjoining cages for the first few months of the baby’s life, as microphones record all the vocalizations. Hours and hours of tape capture how the youngster’s song matures, from harsh squawking to a rich and complex mating call.
Troyer, who started as a mathematician and worked his way into brain research, analyzes the songs and breaks them into their most minute elements.
The calculations become the basis of computer models that suggest what areas of the brain are involved as the song first is learned, and later reproduced by the youngster. “I am trying to get at what they are really learning,” Troyer said. “They start off really bad, but they get better. There’s lots of things going on and I am trying to really characterize that in a detailed quantitative way.”
Troyer’s work is proving valuable to other scientists who are trying to discover the pathways of learning and motor movement inside the brain, said Marc Schmidt, an associate professor of biology at the University of Pennsylvania.
“Prior to Todd’s work, we imagined that one area did everything,” Schmidt said. “Now he is forcing us to look more carefully and suggesting there are multiple areas that contribute to these behaviors.”
Birds’ brains are very different from those of humans, and the leap from the biology lab to human disease is a long one, Troyer and Schmidt said. But scientists hope the growing knowledge of how bird brains work will contribute to the understanding of what happens when human brains malfunction, they said. “
For song, you have complex motor movement and it is learned,” Schmidt said. “You want to know what parts of the brain contribute to the motor movement; clearly, in some human diseases, these parts of the brain malfunction.”
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Dr Van Auken discusses the flora
This year's summer program is to take place May 26-June 19, 2009 and will include the Flora and Fauna of West Texas, New Mexico, and Arizona. The Field Biology Summer Program is an intensive 3½ week course offered through the University of Texas at San Antonio. It is open to all current students of the University of Texas at San Antonio with more than 30 semester credit hours. There are no prerequisites. Informational meetings will be held Feb. 5th and 6th at 4PM in BSB 3.03.02. More information can be found on the Summer Program in Field Biology page.

Lecture, on a boat
This year's Marine Biology field trip happens September 12-13. Students take this opportunity to learn about field and laboratory methods used in Marine Biology and will occur at the University of Texas Marine Institute in Port Aransas. Additional information on the recurring trip can be found on the:
BIO 4952.001 Syllabus
BIO 4952.001 Class Flyer

Dr Taylor at Week of Welcome
The Biology department along with the rest of UTSA welcomes all new and returning students for the fall 2008 semester! Activities for all students are available during the first week of the semester starting August 22nd until the 29th. The Biology department personally invites all students to the Science Building on Monday the 25th for goodie bags (while they last!) and the opportunity to meet Biology professors, instructors, and staff.
Roadrunner Days 2008 schedule

Dr Matthew Wayner
A reception to honor the career of Dr Matthew J Wayner will be held on April 24th in the Bioscience building Loeffler room (BSB-3.03.02) from 1PM-3PM. Please join us along with friends, family, and colleagues to celebrate the career and retirement of one of the Biology department's distingushed tenure reseach faculty. Dr Wayner, a professor in Neurobiology, has conducted work with UTSA since 1983.
Dr Wayner's UTSA lab page

Fall 2007 Ph D Graduates
The Biology Department would like to proudly recognize it's Ph. D graduates for Fall 2007. The Biology department congratulates them along with the rest of UTSA's biology graduates for their pursuit of academic excellence in the Biology field.
Gallery
Pictured from left to right: Dr. Barea, Rosa Villanueva Ph D., Dr. Phelix, Ernesto Perez Ph D., Dr. Lundell, Dr. J Martinez, Ulises Ricoy Ph D., Rogelio Zamilpa Ph D., Jesus Munoz Ph D., Dr. Tsin, Dr. Haro, Alberto Muniz Ph D. (not pictured, but also a member of the graduating class is Juan Gomez Ph D.)

2007 Biology Departmental Retreat
Dr. Barea, Dr Engleberth, Dr Renthal, and Dr Lopez-Ribot (pictured clockwise from the left) along with 60 other Biology department faculty and staff discuss the future of UTSA's Biology department at the 2007 Biology department retreat.
Gallery
By Cindy Tumiel - Express-News
Coastal toads, it seems, don't like to interrupt each other. A male toad, sitting in the dark, swampy waters of the Cibolo Nature Center, will delay his slow, throaty mating call until another male toad, sitting a few feet away, wraps up his serenade to the lady frogs who hang around the pond every night.
Rama Ratnam, an assistant professor of biology at the University of Texas at San Antonio, laughs and shrugs at the question. Because in the same pond, male cricket frogs, close relatives of the toads, show no such good manners. They chirp away incessantly, making rapid-fire clicking sounds with no regard for their neighbors and oblivious to the confusing racket they are making.
Is this a demonstration on the evolution of politeness?
Ratnam has recorded hours of frog chorusing at the nature center near Boerne, and hopes the croaks and clicks of these amphibians will shed light on the biology and ecology of these species, as well as become a bridge to understanding how humans hear.
"Yes, they are much lower vertebrates than humans, but there are some commonalities in the way the auditory systems have evolved," said Ratnam, who studies the way the brain perceives and processes sounds. "There are certain basic circuits that are preserved across species. It doesn't matter if you're an amphibian. It doesn't matter if you're a primate."
Frog vocabulary is pretty simple. The amphibians use calls to define territory and to communicate their availability to potential mates. They also have a distress call when they are, for example, in the grasp of a predator. But some frogs at least appear to deliberately avoid calling out at the same moment as nearby frogs of the same species. Since this chorusing happens at night in the dark, Ratnam said, this shows that they are able to use sound to perceive the location and distance of nearby animals, even in a noisy pond filled with dozens of croaking frogs and toads.
"We don't understand how these problems are being solved in the brain," Ratnam said.
It is, he said, the same "cocktail party question" that has dogged auditory specialists for years. How do brains - of both human and lower species - filter sound in a noisy environment, focusing on the sounds that interest them?
Ratnam and a colleague from the University of Illinois Urbana-Champaign spent weeks traipsing through the spring-fed pond at the nature center outside Boerne last summer. They mounted sophisticated electronics on poles around the pond and were able to capture both the sounds and the locations of the creatures as they sang.
For Doug Jones, an engineering professor at the Illinois campus, the project offers a way to test and refine new electronic equipment that does a better job of filtering out background noise. That could lead both to improved methods for recording sound in remote locations and to more sensitive hearing aids for hearing-impaired people, Jones said.
"What we have had to learn is how to adjust to the differences in the environment and learn from the signals themselves," he said. "Now we will be able to take that back to hearing aids and make hearing aids that work in a reverberant room."
Next spring, after seasonal rains refill the ponds, Ratnam and Jones will take their electronics to the nature center again, and also to Mitchell Lake on San Antonio's South Side, where a larger variety of species make their homes. Ratnam said he is eager to get back outdoors to the natural lullaby of a pond full of singing frogs.
"It is very pleasant to listen to. I feel like I get paid to have fun," Ratnam said. "It's very, very peaceful."
Link to story
KENS 5 News report
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